GenomeComb

cg2sreg

Format

cg cg2sreg ?options? cgvarfile outputfile

Summary

Extracts sequenced region data from a Complete Genomics format file in tsv (tab separated, simple feature table) format. The command will also sort the tsv appropriately.

Arguments

cgvarfile
Complete genomics var file to be converted. File may be compressed.
outfile
write results to outfile

Options

-sorted 0/1
Use 1 if the CG var is already sorted (so they are not sorted gain first)

Category

Conversion