GenomeComb

index

Format

cg index ?options? tsvfile

Summary

make indices for a tsv file

Description

This command creates a directory with indices that may speed up some functionality. It is mainly used (and needed) for providing fast access to the file in cg viz. The optional column indices will speed up some queries, but can take a significant amount of disc space

Arguments

tsvfile
file to index
-refdir filename
filename of a directory that contains the reference databases (genome sequence, annotion, etc.) for the build the file is based on
-colinfo
gather information on content of all columns, and save this into the index directory
-db 'databasename tablename'
-cols
Add extra column indices

Category

tsv