cg liftregion regionfile resultfile liftoverfile
Use liftover to convert a region file from one build to another
Converts a regionfile from one build to another (using liftover from ucsc). The region are lifted as separate 1 base long parts, meaning that a region can be split or miss parts. A liftover conversion is likely to cause loss of information: not all variants/regions can be properly converted. Variants that were dropped in the conversion, will be available in resultfile.unmapped.