GenomeComb

Multireg

Format

cg multireg compar_file ?file? ...

Summary

Compare multiple regions files

Description

This command is used to create multiregion compar_files. These are tab separated files indicating which regions are present in multiple samples. The first columns indicate the position of the region using the chromosome,begin,end columns. These are followed by columns containing 1 if the region is present in samplename and 0 if not.

Arguments

compar_file
file containing regions, and columns indicating the presence of the region
file
region files to be added the compar_file. The name of the column is name of the file added without extension

Category

Regions