GenomeComb

Process

Format

cg process_rtgsample sampledir destdir ?force?

Summary

Convert rtg data to cg format

Description

processes (sorting annotating, etc.) one rtg sample directory, and writes the adapted data into destdir. By default, only files that are not present already will be created."

Arguments

sampledir
data directory as it comes from Complete Genomics
destdir
data directory to be created, containing data in the cg format
force
When force is given as a parameter, everything will be recalculated and overwritten."

Category

Conversion