GenomeComb

Process

Format

cg process_sample ?options? ?sampledir? destdir ?force?

Summary

Convert Complete Genomics data to cg format and add several analysis files

Description

processes (sorting annotating, etc.) one Complete Genomics sample directory, and writes the adapted data into destdir. By default, only files that are not present already will be created."

Options

supports job options (more info with cg help joboptions)

Arguments

sampledir
data directory as it comes from Complete Genomics
destdir
data directory to be created, containing data in the cg format
force
When force is given as a parameter, everything will be recalculated and overwritten."

Category

Conversion