GenomeComb

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Scientific applications

Filter Selection

Supplementary Data Reumers, De Rijk et al

Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

Bcol_table

Format

cg bcol table ?options? bcolfile ?start? ?end?

Summary

Outputs the data in a bcol file as tab-separated

Description

Outputs the tab delimited version of the data in the bcol file (to stdout).

Multiple columns (of the same type) can be stored in one bcol file, e.g. for variant annotation (a different score for each potential alternative allele).

Arguments

bcolfile

name of bcolfile

start

starting position

end

end position

Options

-c chromosome (--chromosome)

select only data from chromosome

-s 0/1 (--showchromosome)

set to 0 to suppress the chromosome column in the output (default 1)

-p precision (--precision)

output precision for floating point data (default precision is stored in the bcol file)

Category

Format Conversion