Genomecomb moved to github on https://github.com/derijkp/genomecomb
with documentation on https://derijkp.github.io/genomecomb.
For up to date versions, go there. These pages only remain here for the data on the older scientific
application (or if someone really needs a long obsolete version of the software)
GenomeComb
Supplementary Information
Note S4: Validation experiments
Del-Favero_Lambrechts_SupplNoteS4.xlsx
Contains the following data:
- Validation of shared SNVs in the monozygotic twin using SNP arrays and Sequenom MassARRAY
- SNV validation using Sanger sequencing
- Validation of the somatic missense SNVs in the tumor-normal genomes using Sequenom MassARRAY genotyping
Note S7: Filter combinations applied on the compared monozygotic twin genomes
Del-Favero_Lambrechts_SupplNoteS7.xlsx
Contains the following data:
- Filter combinations applied on the compared monozygotic twin genomes using a low coverage depth cutoff of 20
- Filter combinations applied on the compared monozygotic twin genomes using a low coverage depth cutoff of 10
Note S10: Functional annotation of SNVs and mutated genes
Del-Favero_Lambrechts_SupplNoteS7.xlsx
Contains the following data:
- SIFT, PolyPhen and CanPredict predictions on the 38 confirmed somatic missense mutations
- Analyis of somatic SNVs in transcription factor binding sites
Note S11: Filter combinations applied on the NA19240 CG and Illumina genomes
Del-Favero_Lambrechts_SupplNoteS11.xlsx
Contains the following data:
- Filter combinations applied on the NA19240 Illumina genome compared to the unfiltered NA19240 CG genome
- Filter combinations applied on the NA19240 Illumina genome compared to the stringently filtered NA19240 CG genome
