GenomeComb

Home

Contact

Installation

Documentation

Introduction

Reference

Howtos

Scientific applications

Filter Selection

Supplementary Data Reumers, De Rijk et al

Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

cg2sreg

Format

cg cg2sreg ?options? cgvarfile outputfile

Summary

Extracts sequenced region data from a Complete Genomics format file in tsv (tab separated, simple feature table) format. The command will also sort the tsv appropriately.

Arguments

cgvarfile

Complete genomics var file to be converted. File may be compressed.

outfile

write results to outfile

Options

-sorted 0/1

Use 1 if the CG var is already sorted (so they are not sorted gain first)

Category

Format Conversion