GenomeComb



Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

geneannot2reg

Format

cg geneannot2reg generegfile geneannotfile

Summary

Creates a (region) annotation file based on a genelist with annotations.

Description

Creates a (region) annotation file based on a genelist with annotations. The regions coverd by each gene are in generegfile (which is included, but can be generated from a desired geneset using cg gene2reg). The resulting annotation file is written to stdout. The filename of the new annotation file should start with reg_ (for region annotation)

Arguments

generegfile
file containing the region covered by each gene
geneannotfile
tab separated file containing gene names and associated annotation data

Category

Annotation