GenomeComb



Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

homwes

Format

cg homwes_compare resultfile refhomwesfile ?homwesfile ...?

Summary

finds regions of homozygosity based on a variant file

Description

This command will create a multireg file (resultfile) comparing all homwes region files given. A file resultfile.summary.tsv will also be created with summary information about the files and comparison data with the first file (refhomwesfile)

Arguments

resultfile
multireg file that will compare the given regions.
refhomwesfile
resultfile with regions from a cg homwes analysis for one individual sample (not the multireg file), to be used as the reference
homwesfile
resultfile with regions from a cg homwes analysis for one individual sample (not the multireg file), to be used added

Category

Analysis