Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

index

Format

cg index ?options? tsvfile

Summary

make indices for a tsv file

Description

This command creates a directory with indices that may speed up some functionality. It is mainly used (and needed) for providing fast access to the file in cg viz. The optional column indices will speed up some queries, but can take a significant amount of disc space

Arguments

tsvfile: file to index

Options

-refdir filename: filename of a directory that contains the reference databases (genome sequence, annotion, etc.) for the build the file is based on
-colinfo: gather information on content of all columns, and save this into the index directory
-db 'databasename tablename'
-cols: Add extra column indices

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