GenomeComb

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Supplementary Data Reumers, De Rijk et al

Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

liftchain2tsv

Format

cg liftchain2tsv chainfile outputfile

Summary

Converts data in UCSC chain file format (for liftOver) to a tsv (tab separated) format to be used in e.g. cg liftregion.

Arguments

chainfile

UCSC chain file as used in liftOver

outputfile

name of tsv file to be created, will contain corresponding regions in the to reference genomes

Category

Conversion