Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

Process

Format

cg process_rtgsample sampledir destdir ?force?

Summary

Convert rtg data to cg format

Description

processes (sorting annotating, etc.) one rtg sample directory, and writes the adapted data into destdir. By default, only files that are not present already will be created."

Arguments

sampledir: data directory as it comes from Complete Genomics
destdir: data directory to be created, containing data in the cg format
force: When force is given as a parameter, everything will be recalculated and overwritten."

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