Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

Regjoin

Format

cg regjoin ?options? ?region_file1? ?region_file2?

Summary

join regions in 1 or 2 regionfiles

Description

Regions files are tab separated files that contain regions using the columns chromosome, begin, end. Regions must be sorted. regjoin joins all overlapping or adjoined regions into one region. The resulting regions files is written to stdout. If no arguments are given, a region file should be entered via stdin

Arguments

region_file1: regions file
region_file2: second regions file

Options

-fields: if fields is given, only regions that, consecutively, have the same value for the given fields will be joined. This only works with one region file (and is a significantly slower)

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