GenomeComb



Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

renamesamples

Format

cg renamesamples dir/file samplename newsamplename ...

Summary

Converts the sample names in a file or entire directory to other names.

Description

The command converts the sample names in a file or entire directory to other names. This includes changing the header in multicompar files (tsv or sft extension), or renaming the files or directories that contain the sample name in the file name.

Arguments

dir/file
file or directory to be converted.
samplename
current name of sample
newsamplename
new name of sample

Category

Process