Genomecomb moved to github on https://github.com/derijkp/genomecomb with documentation on https://derijkp.github.io/genomecomb. For up to date versions, go there. These pages only remain here for the data on the older scientific application (or if someone really needs a long obsolete version of the software)

split

Format

cg split ?options? file field prefix ?postfix?

Summary

split a tab separated file in multiple tab separated files based on the content of a (usually chromosome) field.

Description

The given tab separated file will be parsed, each line appended to a file given by prefix and postfix with the content of the chromosome field in between. This can also be more generally used to split based on any field using the -f option

Arguments

file ...: file to be split
prefix ...: first part of filenames to be generated
postfix ...: part of filenames to be generated after the field value

Options

-f: force overwrite of ref if different from genome sequence in dbdir, instead of giving error
field: name of field upon which rows will be separated (default is chromosome field)

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